for Scientific Computing
Get the most out of AMBER20, GROMACS, NAMD, RELION 3.1, Scipion and all of Cryo-EM Software and Deep Learning Applications.
Our systems based on new 2080 Ti, Titan RTX , Titan V, Quadro RTX-8000
All NVidia GeForce systems are fully validated for numerical correctness using custom validation suites.
Will you expect to need more GPU Memory in your Cryo-EM, Molecular Dynamics, Deep Learning Applications ?
AMBER 20 (April 2020) is available optimized and preinstalled through a collaboration with principal developer Prof. Ross Walker. Combined with our GPU workstations this provides the world’s fastest molecular dynamics simulation solution on desktop hardware. Preinstalled turnkey solutions are also available for other popular life sciences packages including GROMACS, VMD, MGLTools and more. Custom software installation is available on request.
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy. It integrates several software packages and presents a unified interface for both biologists and developers. Scipion allows you to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on.
The Huygens Software Suite consists of different image processing packages available for Windows, Linux and Mac OS X. Functionalities include deconvolution, interactive analysis, and volume visualization of 2D-3D multi-channel and time series images from fluorescence microscopes such as widefield, confocal, multi-photon, spinning disk, STED and SPIM
DualSPHysics is based on the Smoothed Particle Hydrodynamics model named SPHysics (www.sphysics.org).
The code is developed (GNU Lesser General Public License) to study free-surface flow phenomena where Eulerian methods can be difficult to apply. DualSPHysics is a set of C++, CUDA and Java codes designed to deal with real-life engineering problems.
Relion 3.1 (released July 2020) is an image processing software designed specifically for cryo-electron microscopy (cryo-EM). Developed by the group of Sjors Scheres at the MRC Laboratory of Molecular Biology, the Relion framework is revolutionizing the cryo-EM field. GPU acceleration of computationally expensive algorithms has been performed in RELION software, with excellent results. In these new release, resolution improvements of 0.2-0.7 Å are achieved compared to previous RELION version
We install and configure CentOS 7.7 Linux Operating System. CentOS is a very robust and stable Linux distribution. CentOS Linux is a community-supported distribution derived from sources freely provided to the public by Red Hat for Red Hat Enterprise Linux (RHEL). Each CentOS version is maintained for up to 10 years by means of security updates.
We configure many services you may need, as Samba, VNC, rsync, ssh.
CryoEM Tomography is a new field in CryoEM. Software like Dynamo and emClarity are able to use GPU CUDA code. However we need a lot of GPU Memory to run these applications. We are now offering solutions based on 24GB RTX Titan , 24GB Quadro RTX-6000, 48GB Quadro RTX-8000
High speed and high capacity disk systems are configured.
We have finished building Deep Learning Dev Box Stack v8.0 which now supports Ubuntu 18.04. We can ship all new deep learning machines with Ubuntu 18.04. The new install also includes both python 2.7 and python 3 side by side with all packages installed for both python 2.7 and python 3.
Tensorflow is also setup so it is easy to upgrade.
It has never been easier to work on your server remotely
We configure VNC, XRDP, Anydesk, Samba or any other service you need