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Services

We provide turn-key systems, so we install a lot of software in order you use it as opening the box. In addition we configure your Network and Remote access.

Cryo-EM Services

RELION Cryo-EM Stack

We install our RELION Cryo-EM Stack as well as SCIPION.

  • CUDA v7.5, v8.0, v9.1, v9.2, v 10.0
  • NVIDIA driver
  • MPICH + OPENMPI
  • Motioncorr v2.1
  • CTFFind + Gctf
  • RELION 3. NEW
  • Chimera
  • Resmap
  • SCIPION with tutorials and examples

Basic Support (1 Year)

We provide 1 year support of Scipion Installation on our Workstatiosn and Servers.

  • Installation of Scipion and related Cryo-EM software stack.
  • Rapid fix of issues related to possible Scipion bugs.
  • Consultation of data processing strategies within Scipion.

Advanced (1 Year)

We provide 1 year support of Scipion Installation on our Workstatiosn and Servers.

  • All features included in the Basic Support.
  • Advice for configuration of Scipion and EM software in HPC environments.
  • Consultation for configuration of automation and on-the-fly data processing.
  • More priority of requested features for quicker implementation.
  • Update of new versions of the EM software stack.

Molecular Dynamics Services

AMBER 18

AMBER is a key application in molecular dynamics used to simulate biocatalysis and the interaction between drug candidates and protein receptors. An exemplary feature of AMBER is the ability to use NVIDIA GPUs to massively accelerate complex molecular simulations. As the sole provider of AMBER Certified MD Systems, LinuxVixion, S.L. develops turnkey solutions in collaboration with key AMBER developers to provide value-add systems for GPU accelerated Molecular Dynamics simulations.
We can manage the purchase of Amber License

GROMACS

Gromacs is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. By leveraging the CUDA parallel processing architecture of NVIDIA GPUs, GPU acceleration is now a core part of GROMACS that works in combination with GROMACS’ domain decomposition and load balancing code, delivering performance up to 5x when compared to CPU-only processing.

NAMD

NAMD, recipient of a 2002 Gordon Bell Award and a 2012 Sidney Fernbach Award, is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm++ parallel objects, NAMD scales to hundreds of cores for typical simulations and beyond 500,000 cores for the largest simulations. NAMD uses the popular molecular graphics program VMD for simulation setup and trajectory analysis, but is also file-compatible with AMBER, CHARMM, and X-PLOR.

Linux Services

Centos Linux 7.6

We help our customers to solve their computational needs, from basic Network configuration and Remote access, to more advanced services.

We offer maintenance remote services for your Cryo-EM Lab or Molecular Dynamics Lab as a yearly based contract.

  • Check OS updates.
  • NVIDIA driver resinstallation and updates
  • Software updates
  • New standard software installation
  • Hardware testing
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BACKUP 10Gbe

We provide easy solutions to your Cryo-EM Lab or Molecular Dynamics Lab.
We offer LAB simple solutions using 10GBe technology.

  • 100 TB Storage.
  • 10 GBe speeds
  • NFS or CIFS configuration
  • M2 disks superfast cache

Virtual Machines

We help you to install and configure Virtual Machines under our Linux Servers. We design the complete Network solution including switching and cabling

  • Virtual Box installation
  • File sharing Linux-Windows
  • Network configuration.

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